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SRX11355579: Amplicon sequencing of Radix natalensis and infecting trematodes: whole specimen
1 ILLUMINA (Illumina MiSeq) run: 230,266 spots, 138.6M bases, 77.5Mb downloads

Design: Multiplex amplification of 4 snails markers (2 x cox1, ITS1 and NAD1) and 5 tremade markers (2 x cox1, ITS2, cytb and NAD1)
Submitted by: UGent
Study: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing.
PRJNA743924 • SRP327035 • All experiments • All runs
show Abstracthide Abstract
Several methodological issues currently hamper the study of entire trematode communities within populations of their intermediate snail hosts. Here we develop a new workflow using high-throughput amplicon sequencing to simultaneously genotype snail hosts and their infecting trematode parasites.
Sample:
SAMN20063190 • SRS9402491 • All experiments • All runs
Organism: Radix natalensis
Library:
Name: 485
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 230,266 spots, 138.6M bases, 77.5Mb
Run# of Spots# of BasesSizePublished
SRR15044841230,266138.6M77.5Mb2021-07-05

ID:
15164361

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